I can sense that you are getting pretty frustrated and probably should step away from this thing and give yourself time to ponder....
I have been there....it has been a long time...but I remember an instance once where I was stumped on something...I thought that I had tried every possible method to get something working and despite my best efforts at the time...nothing was fixing the problem...
It was frustration beyond belief...I was seriously questioning myself and my ability to do my job....
I had to step away...next morning...I had the answer...and I felt like a total dumb a$$...but I got it fixed...and I learned that I can only fix something if I have enough info on what it needs to work and if I am in the right frame of mind to put it all together and find the missing link.
What kind of tool are you using to test for continuity..?
If it is just a test light...it is going to be a lot harder to sort it all out...
I would invest in a Power Probe...
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You don't necessarily need the latest model....older versions will work for you, I figure...ebay and amazon...
The second thing you could use is a comprehensive wiring diagram...that would give you the whole story on your circuitry..
I probably did a less-than-sufficient job of explaining my method of testing the NSS...I have had very few of them go bad over the years...and I just took them for granted and never really thought about whether they are a path for the positive 12V or merely a ground path..
...but after thinking about Ford's tendency to not want to give the vehicle any reason to catch fire...I don't have a wiring diagram handy...but I believe that the switch (NSS) is merely a ground path to allow the starter relay to activate...just a guess...
If you could get ahold of a diagram that shows the whole start circuitry...you might get a handle on this thing...
As far as the wiring jumper you have found...if you don't have cruise control...I would guess that those green wires were to the brake switch for that option...
Where my truck is and where I am now...I am not able to check the color of the wires to my clutch switch...but when I am...I will let you know...