Well, I finally got it(a relief to all on this board probably).
As far as the fork arm being installed improperly, during the slave install battle I did find out that one of the little spring fingers that holds onto the pivot ball was trapped underneath the arm instead of behind the ball like it was supposed to be. But after I fixed that, I made sure it was engaged properly.
I re-installed the master today and adjusted the rod to give me all the travel I could get without putting pressure on the master. It felt better, so I got the rest of it together and started it up, and the gears were still clashing. I put it in 5th, and then ****** it down into reverse and backed it out of the garage. Turned it around(still scraping gears) and started down my driveway. My driveway is very steep and by the time I got to the bottom the clutch was working a lot better. I took it for a spin down the road, and the more I drove it, the better it got, so it still must have had some air in it. What a relief.