Well good news!!!
Got it sucked down, and filled up today. Drove her 100 miles today with ICE COLD AC, man was it nice. I towed back my jeep from an Event in Vermont, it was nice to just have the windows up, AC on Low and the radio on just cruising. Nice and quiet, no pollen flying in or road noise in my ears.
Also good news, truck shifts fine again, I dont know what fixed it, but set the TPS from 1.08 to 1.2 Volts, Still shifted hard for bit on the way to VT, After sitting for a day or two, nice smooth shifts all the way home.
I am glad I spent the extra time flushing the Cores, and replacing all the O rings and hoses. Thanks for the peer pressure to do it right