Sorry I haven't back with any updates. Ive been working long days and weekends and it hasn't left me with much time to work on the truck. I did purchase a MT480 on ebay for $50.00 less the Lumy probes, and it is in great shape. After talking with many friends across the country I found a guy that had two MT161, and two MT160 probes along with a MT95 alignment tool, I got all of them for $56.00 shipped.
I spent today working on IP timing. I was glad I got the alignment tool as the magnetic probe holder was bent, and now is in the correct position. I set up the pump mark aligned with the cover mark and started it, it was hitting pretty hard (Rattling) let it come to full temp and then ran it up to 1400 RPMs timing was at 3* BTDC. After many tries I now have the timing at -3.5* ATDC at 1400 RPMs. The pump mark is now about a 1/8in from the cover mark (passenger side RH of the truck) it sounds good, no smoke, and starts great. Took it out for a drive power seems good, and just a tinge of smoke when I romp on it hard, and then smoke is gone. Under load WOT I get 8lbs boost with the reference line hooked up.
I am going to install a Pyro gauge this week to see how the exhaust temps look under full load.
I am a little lost as to why the timing marks on the IP and cover are so far off to get it to run correctly. I looked at two other 6.5 trucks that run and sound fine and their timing marks are lined up. Could it be something in the IP?
Recap, Injectors rebuilt to 6.5T spec, rebuilt pump tested by DFI Portland OR, New timing gear set, Fuel drained and tank and lines flushed,Fuel filter GM , Cleaned per-chambers, New glow plugs(AC Delco), New glow plug controller.