There are several ways. It depends on how far apart the thing is.
If the injection pump cover/gear were not removed, then nothing should have moved, and all you got to do is bolt the pump back on, and go.
If however you have removed heads and inj.pump cover and gear, then you need to re-align the injection pump. If the cam gear and crank gear were never moved, they will still be fine, and all you need is the injection pump gear timed.
To do it accurately, you need to find true Top Dead Center. This too can be done several ways. Probably the simplest way is to undoe the #1 glow plug about 1/2 turn. Then you rotate the crank by hand clockwise till you feel resistance and hear hissing coming from the #1 cylinder(compression stroke gasses leaking out). When the piston gets to the top of the cylinder, the hissing will stop, and the line on the harmonic dampener should be pointing to the "0" mark on the timing plate just down under the Alternator. It's really quite easy.
So, now that you have the thing at TDC, you can follow the rest of the instructions in the Timing article
...Poke here...
It sounds long winded, but once you do it, you'll see, it's really quite simple, and works every time.
Sure beats pulling the front cover off...
Good luck with it, and PM me if you have any difficulty, I can walk you through it....
Zigg