I have cracked the nuts, and lose a little rpm at each injector when cracked. Sometimes when accelerating through the gears with moderate pedal, the engine would thrust forward a bit as if the engine received a timing advance so I thought the advanced piston might be stuck. Not an expert on the injector pump. I am going out right now to check with a thermal gun and check the exhaust port temps as you have suggested.
I have noticed that the engine runs smoother when cold then misses more when warm. then for no reason, at times, the engine will rum absolutely smooth, then go back to missing. heading out to check temps now as the engine is cold. It always cranks up, always has except when an occasional air leak shows up, very fast. Faster than some power strokes I have driven.