I can clearly hear the kathunk...but I'm not sure it's a chuff...do the same video, close up to intake opening with no air filter assembly on it, since you say you can still here it.
A valve chuff is a very distinct sound, and intake/exhaust while running it still a distinct sound, not a knock unless...a valve got bent that could be a clatter.
Does the knock/clatter go away or does it remain?
If it goes away when warmed up and no chuff, this is not likely a valve bent as it would stay.
Have you removed VC's to watch rockers in action? Might be an idea...
Sorry for all the ?'s but without answers makes it for pretty much broad spectrum analysis.
Well keep show n tell, we'll see what we can do to assist.
please go direct to the moose master himself, I"m sure that's the best route to deal with the leak as I have nothing to offer other than that.