I assume this is the 86? The best way is to get a heater duct assembly from a later model truck. You are correct, the early trucks had a completely different system in the dash and under the hood depending on if you had A/C or not, and it's a real job to go from one to another. And believe me, you do not want the system with the heater core under the hood. Instead of a 30 minute job changing the heater core on a A/C equipped truck, it turns into a several hour job with a non/AC truck with the core under the hood.
What they did in the later trucks was leave the heater core behind the glove box, even on the non-A/C trucks. If you got a non-A/C system from a later truck it will bolt right in place and eliminate the big evap core protrusion you have now. I don't know when they changed it around, but I know a 89 has the changed non-A/C system under the hood.