Fuel filter was full when I took it off, didn't check the oil for diesel but I checked the diesel for oil. Sorta.
I called up my bud who used to be a diesel tech and he came over and checked it out. He checked through the fuel system and it was black, seems to be coming from the rear tank cause the front tanks wasn't nearly as dirty. I don't think the PO ever actually used the rear tank, and when I filled/switched the tanks to the rear it must've let all hell loose and gummed everything up. He said that from the color of the fuel in the rear tank, it looked to be 50/50 diesel and oil, or some other contaminant. Also found that injectors #3 on the pass side and #4 on the driver side are leaking, but since they're leaking on top and not in the cylinder its probably just the seals, possibly blown out by the bad fuel.
So, the plan now is to pop off the new filter, dump the black out and put the filter back on, switch to tank #1 and turn the pump on for 30 seconds, remove/dump/replace filter and repeat until I get clean diesel coming through, then crank it until the bad fuel is out of the injectors and see if it fires.
I'll worry about the dirty tank later, I can run it on the front one till I get around to cleaning the rear one. Hopefully the 2 leaking injectors aren't bad enough that there won't be enough pressure to run the engine... getting it running is my first priority, then I'll worry about getting it running well.