Not sure where to start but I would bring the engine to top dead center on cylinder #1 and then remove the oil fill spout and see where the dowel pin that goes through the IP gear if it is in any other position other than the 5 o'clock then the person before removed and installed the IP pump wrong and it could be off a couple of teeth on the timing gears, if that is the case, then the IP pump needs to come off along with the pump gear, with the #1 cylinder at TDC the "Y" should be at the top the next step would to get a small mirror to verfiy this and then get the pump gear and line up the timing marks properly, the pump gear must be removed from the IP pump first to do this or you wont be able to line up the timing marks, once the timing marks are lined up on the gears installed install the IP gear cover that was also removed from the pump, now install the pump, and for future removal of the pump all you have to do is remove the 3 small bolts that hold the IP gear to the pump which is the proper way to remove the pump, there are several articles in the tech section that goes into greater deatil, also to properly time the pump to the engine you will need a timing machine, the first step in the timing process is the static timing which means alls the gears are timied right and the pump is close to where it was before it was removed, then get yourself the timing meter to dynamiclly time the pump to the engine running