If the wait to start light is the same as it was before on a very short cycle then replace the controller. Their is no need to replace the controller if the time increases when the new plugs are installed. Also you should no longer hear a rapid click of the controller after the new plugs are in.
That is the wrong information to give someone uninformed as to how GP controller's work.
From 1983 to 1986 6.9 engines, glow plugs should only be on for 5 seconds or less as they are 6VDC plugs and energized with 12VDC or they will fail prematurely, they are a ZD6 glow plug.
From 1983 to 1987 an electronic controller should NOT be used, it's better to have a manual push button to operate a relay and held closed for not more than 5 seconds.
If you have changed over to the PTC Positive Temperature Co-efficient glow plugs, then an electronic controller can be used.
http://www.oilburners.net/brian/idi/FordGPretrocombo.htm
From 1996 to 2003 the cycle time is controlled by the engine oil temperature thru the PCM, they are a ZD11 glow plug.
From 1988 to 1995 the cycle time is controlled as below.
The Zig Zag Chromalox strip hooked to the relay and then to tha GP wires is used for current rush control, it should always be there.
All the GP controllers made since 1988 to 1995 have a thyristor incorporated in the electronic circuit. It senses the ambient temperature and tells the controller how long to stay on, they are ZD9 glow plugs and are 12VDC plugs.
A GP controller will stay on from 0 to 20 seconds depending on the ambient temperature, the thyristor sets the cycle time. If all GP's are good then the controller will turn on for that length of time, then the controller will cycle ON/OFF for up to two minutes to keep the GP's glowing after the engine has started.
ZD9 glow plugs pull 18 amps each to glow then back off to 15 amps each when hot for a total amp load of ~144 to ~120 on the cycle start to finish. With good batteries and GPC relay, the voltage will drop to no more than ~9 VDC then return to ~12.6 VDC. from beginning to end of GP cycle.