I like the idea of the seamstress's tape that bilbo mentioned. I don't think that there's any set measurements that you have to follow. The center three are closer to each other than the outer two are to the closest center one (I hope that made sense). What I would do is to lay down your seamstress's tape. Then find the center of your roof. There's the middle light. Next, I would do is to decide how far from the drip rails that you want the outer two lights. If I was to guess, I'd say in the 15-18" range. Last. decide how far from the center light that you want the other two middle ones. Sit your lights down in their designated spots and go to the front of the truck and see how you like the lay out. If you don't change it. When you finally get it all set up how you like it, mark the roof around the outside of the lights. Finally, start drilling holes.
Now, just to be on the safe side, you may want to get ahold of your DOT to see if there's any rules about how they have to go on. There probably is. If I was close to my Ex Wife, I'd just go and take some measurements for you, but I'm not. I'm going to put some LED clearance lights on her before I start driving her. I'll be cheating and will just replace the old, broken ones that are there.