When I replaced my system, I had to bleed the master cylinder to itself first.
I made 2 short lines that went from the outlets up into the reservior. I had to make the 2 flare connections with threaded fittings. Submerge the ends of the brake lines into the fluid in the reservoir. Pump and fill as necessary to keep the lines submerged. Then quickly disconnect the lines in favor of the actual lines to the brakes.
If you didn't do this, you might try it.
I made 2 short lines that went from the outlets up into the reservior. I had to make the 2 flare connections with threaded fittings. Submerge the ends of the brake lines into the fluid in the reservoir. Pump and fill as necessary to keep the lines submerged. Then quickly disconnect the lines in favor of the actual lines to the brakes.
If you didn't do this, you might try it.