I do not think Ford used SAE patterns with the 6.9.
All of the 6.9/7.3, including PSD engines use an adapter plate for the ford transmissions. Looks like this.
Back at the beginning of the whole mess IH built the 6.9 to be a medium duty truck engine, some say they modified a medium duty gas engine they had (MV404?). So the BLOCK bellhousing mount pattern was set before Ford got into the picture.